I need to use them in a simulation study to test a methods performance for independent snps and correlated snps. I have downloaded the archaea and bacteria trees from gtdbs repo … Now, i need the functional analysis as well. What i want to know is: My interest is not … · i am trying to calculate log2foldchange in deseq2 by hand because i am trying to reproduce my results and understand how deseq2 works. Are the counts … However,clinical significance test may indicate that effect of a tre. There are some specific genes with name ending with suffix rik (e. g. · i need some help in modifying gtdbs phylogenetic trees to achieve a given taxonomic resolution. · im currintly using openvar and opencustom for a pipeline on my phd (beginner with these tools) and somewhat my process crash because needs op_ensembl. gtf that is supposed to … However i am having problem with the function, as the program says i am … The first assembly covers a … · these look like mouse gene identifiiers. I have been using bpga to perform pan-genome analysis on my set of isolates. There should be a way to use biomart as well, but i dont know the speciifics - … In certain cases, traditional significance test may not be able to identify that effect of a treatment or a drug is significant. You might be able to use org. mm. eg. db to map them to aliases. · im interested to extract highly correlated snps. Searching online i found that they are from riken project. · i have two assemblies obtained from two different softwares for the same run data. 0610005c13rik or 0610007c21rik). In one of them, i get a busco score of 69,4%. In the other one, i get 68,5%.
